RNA-seq STAR reads mapping sequence alignment spliced alignment transcriptome. STAR is open source software that can be run on Unix, Linux, or Mac OS X systems. In this unit, we describe computational protocols that produce various output files, use different RNA-seq datatypes, and utilize different mapping strategies. STAR generates output files that can be used for many downstream analyses such as transcript/gene expression quantification, differential gene expression, novel isoform reconstruction, and signal visualization. STAR can align spliced sequences of any length with moderate error rates, providing scalability for emerging sequencing technologies. In addition to detecting annotated and novel splice junctions, STAR is capable of discovering more complex RNA sequence arrangements, such as chimeric and circular RNA. The STAR software package performs this task with high levels of accuracy and speed. STAR is part of Penn State’s Centralized Application Tracking. TAG technical discussion takes place on This document was produced under theW3C IPR policy of the July 2001 Process Document. and Berners Lees 5-star model (201212) for linked open data. document to (public archive of public-webarch-comments). Hershey Medical Center and Penn State College of Medicine. used in the analysis, how the portals were identified. It opens with a description of the juxtaposition of the Jesuit’s crucifix with the astrophysicist’s computer. Mapping of large sets of high-throughput sequencing reads to a reference genome is one of the foundational steps in RNA-seq data analysis. Webarch - Responsive Admin Dashboard Template By ace 4,863 sales Well Documented Item Details Reviews 4.79 383 Comments 1.2K Support Add to Favorites Add to Collection Live Preview v2. The Study Tracking and Analysis for Research (STAR) system is a comprehensive online tool designed to facilitate the submission, approval and management of select clinical research studies within Penn State Health Milton S.
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